Partner Resource entry RDF
Input data
- resource entry label (type of entry page)
- e.g. “BCSDB”, “PubChem SID”, “PDBj cc”
- entry ID (external id)
- database name
- entry page URL
- exact match IRI
<http://rdf.glycoinfo.org/{resource_entry_label}/{entry_id}>
a glycan:Resource_entry ;
rdfs:label "{resource_entry_label}" ;
dcterms:identifier "{entry_id}";
glytoucan:in_database <http://rdf.glycoinfo.org/database/{database_name}> ;
rdfs:seeAlso <Resource entry URL> ;
skos:exactMatch <exaceMatch IRI> .
# <http://rdf.glycoinfo.org/database/{database_name}>
# a glytoucan:Database ;
# rdfs:label "{database name}" ;
# rdfs:seeAlso <databae URL> .
Q: Why does not use “glycan:in_glycan_database”?
A: The PubChem and the wwPDB are not glycan database.
Sample template
@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
@prefix dcterms: <http://purl.org/dc/terms/> .
@prefix glycan: <http://purl.jp/bio/12/glyco/glycan#> .
@prefix glytoucan: <http://www.glytoucan.org/glyco/owl/glytoucan#> .
@prefix skos: <http://www.w3.org/2004/02/skos/core#> .
<http://rdf.glycoinfo.org/glycan/{accession_number}>
a glycan:Saccharide ;
glycan:has_resource_entry <http://rdf.glycoinfo.org/pdbj-cc/{pdb_chem-comp_id}> ;
<http://rdf.glycoinfo.org/pdbj-cc/{pdb_chem-comp_id}>
a glycan:Resource_entry ;
rdfs:label "PDBj CC" ;
dcterms:identifier "{pdb_chem-comp_id}";
glycan:in_glycan_database glycan:Database_pdbj ;
rdfs:seeAlso <http://pdbj.org/chemie/summary/{pdb_chem-comp_id}> ;
skos:exactMatch <http://rdf.wwpdb.org/cc/{pdb_chem-comp_id}> .